Message Board

Respected readers, authors and reviewers, you can add comments to this page on any questions about the contribution, review, editing and publication of this journal. We will give you an answer as soon as possible. Thank you for your support!

Full name
E-mail
Phone number
Title
Message
Verification Code
Turn off MathJax
Article Contents
Wang Guiying,Li Hongjun,Shao Kuishuang, et al. Evaluation of benthic ecological quality status in the Yalu River estuary based on environmental DNA[J]. Haiyang Xuebao,2024, 46(x):1–14 doi: 10.12284/hyxb2024058
Citation: Wang Guiying,Li Hongjun,Shao Kuishuang, et al. Evaluation of benthic ecological quality status in the Yalu River estuary based on environmental DNA[J]. Haiyang Xuebao,2024, 46(x):1–14 doi: 10.12284/hyxb2024058

Evaluation of benthic ecological quality status in the Yalu River estuary based on environmental DNA

doi: 10.12284/hyxb2024058
  • Received Date: 2023-09-06
  • Rev Recd Date: 2024-01-17
  • Available Online: 2024-03-22
  • Investigating the potential for application of environmental DNA to identify benthic organisms for evaluating ecological quality status collection of 17 benthic samples from the Yalu River estuary, environmental DNA and morphological identification and comparative analyses of the resulting ecological quality assessment indices (AMBI, BENTIX, Shannon-Wiener H', M-AMBI) were used, respectively. The results show: environmental DNA identification of organisms belonging to 10 class, 16 orders, 19 families, 20 genera and 22 species, morphological identification of organisms belonging to 9 class, 27 orders, 43 families, 55 genera and 57 species, with a total of 10 organisms; the two methods of identification yielded AMBI inter-index (R = 0.428, p = 0.043, y = 0.32x + 1.08), BENTIX inter-exponential (R = 0.430, p = 0.043, y = 0.28x + 3.59) significant consistency exists, while there was significant difference between the Shannon-Wiener H' indices; the two methods of identification yielded AMBI intergrade,M-AMBI intergrade higher similarity, 51.02 per cent, 44.90 per cent, respectively; the AMBI and M-AMBI grades from the two identification methods were more in line with the actual situation and evaluated the overall ecological quality status of the Yalu River estuary as good. This study demonstrates that the identification of benthic organisms based on environmental DNA to evaluate the ecological quality status has a high potential for application in marine environmental monitoring surveys.
  • loading
  • [1]
    吴昀晟, 唐永凯, 李建林, 等. 水生生物环境DNA检测技术及其应用[J]. 水产学杂志, 2018, 31(4): 48−52,58. doi: 10.3969/j.issn.1005-3832.2018.04.010

    Wu Yunsheng, Tang Yongkai, Li Jianlin, et al. Detection technology and application of aquatic environmental DNA[J]. Chinese Journal of Fisheries, 2018, 31(4): 48−52,58. doi: 10.3969/j.issn.1005-3832.2018.04.010
    [2]
    卢珊. 常见水生动物与其环境DNA的定性与定量关系[D]. 南京: 南京师范大学, 2015.

    Lu Shan. Qualitative and quantitative relationship between common aquatic animals and their environmental DNA[D]. Nanjing: Nanjing Normal University, 2015. (查阅网上资料, 未找到对应的英文翻译, 请确认)
    [3]
    刘科均, 赖锡勋, 向劲, 等. 环境DNA技术在水域环境中的应用进展[J]. 水产养殖, 2023, 44(11): 16−21,27. doi: 10.3969/j.issn.1004-2091.2023.11.003

    Liu Kejun, Lai Xixun, Xiang Jin, et al. Progress in the application of environmental DNA technology in aquatic environment study[J]. Journal of Aquaculture, 2023, 44(11): 16−21,27. doi: 10.3969/j.issn.1004-2091.2023.11.003
    [4]
    陈炼, 吴琳, 刘燕, 等. 环境DNA metabarcoding及其在生态学研究中的应用[J]. 生态学报, 2016, 36(15): 4573−4582.

    Chen Lian, Wu Lin, Liu Yan, et al. Application of environmental DNA metabarcoding in ecology[J]. Acta Ecologica Sinica, 2016, 36(15): 4573−4582.
    [5]
    肖泽华, 董姗姗, 张振华, 等. 环境DNA在两栖动物监测中的应用研究进展[J]. 生态学报, 2023, 43(19): 7861−7873.

    Xiao Zehua, Dong Shanshan, Zhang Zhenhua, et al. Advances in the application of environmental DNA in amphibians monitoring[J]. Acta Ecologica Sinica, 2023, 43(19): 7861−7873.
    [6]
    李飞龙, 杨江华, 杨雅楠, 等. 环境DNA宏条形码监测水生态系统变化与健康状态[J]. 中国环境监测, 2018, 34(6): 37−46.

    Li Feilong, Yang Jianghua, Yang Ya’nan, et al. Using environmental DNA metabarcoding to monitor the changes and health status of aquatic ecosystems[J]. Environmental Monitoring in China, 2018, 34(6): 37−46.
    [7]
    许秀娥, 毛誉洁, 宋吉尧, 等. 鸭绿江口湿地生态系统现状调查分析及对策研究[J]. 海洋湖沼通报, 2022, 44(5): 162−168.

    Xu Xiu'e, Mao Yujie, Song Jiyao, et al. Present situation investigation and countermeasures analysis of wetland ecosystem in Yalu River Estuary[J]. Transactions of Oceanology and Limnology, 2022, 44(5): 162−168.
    [8]
    王桂营. 利用环境DNA分析鸭绿江口底栖生物多样性[D]. 大连: 大连海洋大学, 2022.

    Wang Guiying. Analysis of benthic biodiversity in the Yalu River estuary using environmental DNA[D]. Dalian: Dalian Ocean University, 2022.
    [9]
    林和山, 俞炜炜, 刘坤, 等. 基于AMBI和M-AMBI法的底栖生态环境质量评价——以厦门五缘湾海域为例[J]. 海洋学报, 2015, 37(8): 76−87.

    Lin Heshan, Yu Weiwei, Liu Kun, et al. Assessing benthic ecological status in stressed Wuyuan Bay (Xiamen China) using AMBI and M-AMBI[J]. Haiyang Xuebao, 2015, 37(8): 76−87.
    [10]
    Simboura N, Argyrou M. An insight into the performance of benthic classification indices tested in Eastern Mediterranean coastal waters[J]. Marine Pollution Bulletin, 2010, 60(5): 701−709. doi: 10.1016/j.marpolbul.2009.12.005
    [11]
    刘旭东, 王振钟, 汪进生, 等. 基于多指数分析确定胶州湾底栖生态状况的参考条件[J]. 海洋环境科学, 2023, 42(4): 597−603. doi: 10.12111/j.mes.2022-x-0129

    Liu Xudong, Wang Zhenzhong, Wang Jinsheng, et al. Multi-indices analysis to find out benthic ecological reference conditions of Jiaozhou bay[J]. Marine Environmental Science, 2023, 42(4): 597−603. doi: 10.12111/j.mes.2022-x-0129
    [12]
    杨颖, 刘鹏霞, 周红宏, 等. 近15年长江口海域海洋生物变化趋势及健康状况评价[J]. 生态学报, 2020, 40(24): 8892−8904.

    Yang Ying, Liu Pengxia, Zhou Honghong, et al. Evaluation of the biodiversity variation and ecosystem health assessment in Changjiang estuary during the past 15 years[J]. Acta Ecologica Sinica, 2020, 40(24): 8892−8904.
    [13]
    于海燕, 李新正, 李宝泉, 等. 胶州湾大型底栖动物生物多样性现状[J]. 生态学报, 2006, 26(2): 416−422. doi: 10.3321/j.issn:1000-0933.2006.02.014

    Yu Haiyan, Li Xinzheng, Li Baoquan, et al. The species diversity of macrobenthic fauna in Jiaozhou Bay[J]. Acta Ecologica Sinica, 2006, 26(2): 416−422. doi: 10.3321/j.issn:1000-0933.2006.02.014
    [14]
    彭广海, 付婧, 马增岭, 等. 基于3种生物指数的三沙湾养殖活动底栖环境效应研究[J]. 海洋学报, 2018, 40(4): 106−117.

    Peng Guanghai, Fu Jing, Ma Zengling, et al. Effects of mariculture activities on benthic environment based on analysis of three biotic indices in Sansha Bay[J]. Haiyang Xuebao, 2018, 40(4): 106−117.
    [15]
    蔡文倩, 周娟, 林岿璇, 等. 基于底栖生物指数的辽东湾生态质量状况评价[J]. 海洋科学, 2016, 40(10): 105−112. doi: 10.11759//hykx20160115003

    Cai Wenqian, Zhou Juan, Lin Kuixuan, et al. Ecological quality status of Liaodong Bay using benthic indices[J]. Marine Sciences, 2016, 40(10): 105−112. doi: 10.11759//hykx20160115003
    [16]
    蔡文倩, 刘录三, 孟伟, 等. AMBI方法评价环渤海潮间带底栖生态质量的适用性[J]. 环境科学学报, 2012, 32(4): 992−1000.

    Cai Wenqian, Liu Lusan, Meng Wei, et al. The suitability of AMBI to benthic quality assessment on the intertidal zones of Bohai Sea[J]. Acta Scientiae Circumstantiae, 2012, 32(4): 992−1000.
    [17]
    王桂营, 李宏俊, 孙艺, 等. 利用不同生物指数评价辽河口底栖生态质量适用性[J]. 安徽农业科学, 2021, 49(18): 87−93,104. doi: 10.3969/j.issn.0517-6611.2021.18.022

    Wang Guiying, Li Hongjun, Sun Yi, et al. Applicability of evaluation of benthic ecological quality of Liaohe estuary by using different biological indexes[J]. Journal of Anhui Agricultural Sciences, 2021, 49(18): 87−93,104. doi: 10.3969/j.issn.0517-6611.2021.18.022
    [18]
    中华人民共和国国家质量监督检验检疫总局, 中国国家标准化管理委员会. GB/T 12763.6-2007, 海洋调查规范 第6部分: 海洋生物调查[S]. 北京: 中国标准出版社, 2008.

    General Administration of Quality Supervision, Inspection and Quarantine of the People’s Republic of China, Standardization Administration. GB/T 12763.6-2007, Specifications for oceanographic survey—Part 6: marine biological survey[S]. Beijing: Standards Press of China, 2008.
    [19]
    Clark D E, Pilditch C A, Pearman J K, et al. Environmental DNA metabarcoding reveals estuarine benthic community response to nutrient enrichment-Evidence from an in-situ experiment[J]. Environmental Pollution, 2020, 267: 115472. doi: 10.1016/j.envpol.2020.115472
    [20]
    Manual I. FastDNA® SPIN kit for soil. 2010.
    [21]
    Leray M, Yang J Y, Meyer C P, et al. A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents[J]. Frontiers in Zoology, 2013, 10: 34. doi: 10.1186/1742-9994-10-34
    [22]
    Geller J, Meyer C, Parker M, et al. Redesign of PCR primers for mitochondrial cytochrome c oxidase subunit I for marine invertebrates and application in all-taxa biotic surveys[J]. Molecular Ecology Resources, 2013, 13(5): 851−861. doi: 10.1111/1755-0998.12138
    [23]
    Větrovský T, Baldrian P. The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses[J]. PLoS One, 2013, 8(2): e57923. doi: 10.1371/journal.pone.0057923
    [24]
    Zhan A B, Hulák M, Sylvester F, et al. High sensitivity of 454 pyrosequencing for detection of rare species in aquatic communities[J]. Methods in Ecology and Evolution, 2013, 4(6): 558−565. doi: 10.1111/2041-210X.12037
    [25]
    黄宗国, 林茂. 中国海洋生物图集[M]. 北京: 海洋出版社, 2012: 1-317.

    Huang Zongguo, Lin Mao. An Illustrated Guide to Species in China's Seas[M]. Beijing: China Ocean Press, 2012: 1-317.
    [26]
    杨德渐, 孙瑞平. 中国近海多毛环节动物[M]. 北京: 农业出版社, 1988: 1-352.

    Yang Dejian, Sun Ruiping. Polychaeta in China's Nearshore Waters[M]. Beijing: China Agriculture Press, 1988: 1-352.
    [27]
    曹善茂. 大连近海无脊椎动物[M]. 沈阳: 辽宁科学技术出版社, 2017: 1-334.

    Cao Shanmao. Invertebrates in Dalian Nearshore Waters[M]. Shenyang: Liaoning Science and Technology Publishing House, 2017: 1-334.
    [28]
    任先秋. 中国动物志 无脊椎动物 第四十三卷[M]. 北京: 科学出版社, 2012: 1-651.

    Ren Xianqiu. Fauna Sinica: Invertebrata: Vol. 43 [M]. Beijing: Science Press, 2012: 1-651.
    [29]
    李新正, 王洪法. 胶州湾大型底栖生物鉴定图谱[M]. 北京: 科学出版社, 2016: 1-365.

    Li Xinzheng, Wang Hongfa. Identification Atlas of Macro Benthos in Jiaozhou Bay[M]. Beijing: Science Press, 2016: 1-365.
    [30]
    Mulik J, Sukumaran S, Dias H Q. Is the benthic index AMBI impervious to seasonality and data transformations while evaluating the ecological status of an anthropized monsoonal estuary?[J]. Ocean & Coastal Management, 2020, 186: 105080.
    [31]
    陈怡卉, 汪振华, 章守宇, 等. 大陈岛礁海域甲壳类生物多样性特征[J]. 生态学报, 2023, 43(23): 9630−9642.

    Chen Yihui, Wang Zhenhua, Zhang Shouyu, et al. Research on multiple dimensions of crustacean diversity in the sea area around Dachen Islands[J]. Acta Ecologica Sinica, 2023, 43(23): 9630−9642.
    [32]
    Dauvin J C, Ruellet T. Polychaete/amphipod ratio revisited[J]. Marine Pollution Bulletin, 2007, 55(1/6): 215−224.
    [33]
    Blanchet H, Lavesque N, Ruellet T, et al. Use of Biotic Indices in semi-enclosed coastal ecosystems and transitional waters habitats - Implications for the implementation of the European Water Framework Directive[J]. Ecological Indicators, 2008, 8(4): 360−372. doi: 10.1016/j.ecolind.2007.04.003
    [34]
    Chainho P, Costa J L, Chaves M L, et al. Influence of seasonal variability in benthic invertebrate community structure on the use of biotic indices to assess the ecological status of a Portuguese estuary[J]. Marine Pollution Bulletin, 2007, 54(10): 1586−1597. doi: 10.1016/j.marpolbul.2007.06.009
    [35]
    Medeiros J P, Chaves M L, Silva G, et al. Benthic condition in low salinity areas of the Mira estuary (Portugal): lessons learnt from freshwater and marine assessment tools[J]. Ecological Indicators, 2012, 19: 79−88. doi: 10.1016/j.ecolind.2011.09.008
    [36]
    Paganelli D, Forni G, Marchini A, et al. Critical appraisal on the identification of Reference Conditions for the evaluation of ecological quality status along the Emilia-Romagna coast (Italy) using M-AMBI[J]. Marine Pollution Bulletin, 2011, 62(8): 1725−1735. doi: 10.1016/j.marpolbul.2011.05.027
    [37]
    Mulik J, Sukumaran S, Srinivas T, et al. Comparative efficacy of benthic biotic indices in assessing the Ecological Quality Status (EcoQS) of the stressed Ulhas estuary, India[J]. Marine Pollution Bulletin, 2017, 120(1/2): 192−202.
    [38]
    Clarke K R, Gorley R N. Primer E-v5: user manual/tutorial[R]. Plymouth: PRIMER-E Limited, 2001: 1-3.
    [39]
    Leray M, Knowlton N. DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity[J]. Proceedings of the National Academy of Sciences of the United States of America, 2015, 112(7): 2076−2081.
    [40]
    高养春, 李海涛, 王孝程, 等. 利用宏DNA条形码研究浮游动物多样性——以鸭绿江口为例[J]. 生态学报, 2020, 40(11): 3822−3832.

    Gao Yangchun, Li Haitao, Wang Xiaocheng, et al. Research on zooplankton diversity using DNA-based metabarcoding technique: a case study in the Yalvjiang Estuary[J]. Acta Ecologica Sinica, 2020, 40(11): 3822−3832.
    [41]
    Appeltans W, Ahyong S T, Anderson G, et al. The magnitude of global marine species diversity[J]. Current Biology, 2012, 22(23): 2189−2202. doi: 10.1016/j.cub.2012.09.036
    [42]
    Mora C, Tittensor D P, Adl S, et al. How many species are there on earth and in the ocean?[J]. PLoS Biology, 2011, 9(8): e1001127. doi: 10.1371/journal.pbio.1001127
    [43]
    刘卫霞. 北黄海夏、冬两季大型底栖生物生态学研究[D]. 青岛: 中国海洋大学, 2009.

    Liu Weixia. Study on the ecology of macrobenthos in North Yellow Sea in summer and winter[D]. Qingdao: Ocean University of China, 2009.
    [44]
    程岩, 刘月, 李富祥, 等. 鸭绿江口及毗邻浅海沉积物重金属富集特征与潜在生态风险比较[J]. 环境科学研究, 2011, 24(5): 516−525.

    Cheng Yan, Liu Yue, Li Fuxiang, et al. Comparative study of enrichment features and potential ecological risks of heavy metals in sediments of the Yalu River estuary and its adjacent shallow sea area[J]. Research of Environmental Sciences, 2011, 24(5): 516−525.
    [45]
    李红军, 程岩, 杜益晓, 等. 鸭绿江口生源要素的垂直分布及对环境变化的响应[J]. 环境化学, 2022, 41(12): 4068−4076. doi: 10.7524/j.issn.0254-6108.2021052602

    Li Hongjun, Cheng Yan, Du Yixiao, et al. Vertical distribution of the biogenic elements and their response to the environmental change in the Yalu River estuary[J]. Environmental Chemistry, 2022, 41(12): 4068−4076. doi: 10.7524/j.issn.0254-6108.2021052602
  • 加载中

Catalog

    通讯作者: 陈斌, bchen63@163.com
    • 1. 

      沈阳化工大学材料科学与工程学院 沈阳 110142

    1. 本站搜索
    2. 百度学术搜索
    3. 万方数据库搜索
    4. CNKI搜索

    Figures(10)  / Tables(4)

    Article views (43) PDF downloads(16) Cited by()
    Proportional views
    Related

    /

    DownLoad:  Full-Size Img  PowerPoint
    Return
    Return